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  5. AT1G77360

AT1G77360


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000166 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G77360
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT1G80550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G15200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G08310 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G11310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G60960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0010154 fruit development IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0042542 response to hydrogen peroxide IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 197
IPR002885 Pentatricopeptide_repeat 309 337
IPR002885 Pentatricopeptide_repeat 267 298
IPR002885 Pentatricopeptide_repeat 201 246
IPR002885 Pentatricopeptide_repeat 409 457
IPR002885 Pentatricopeptide_repeat 341 387
PLAZA 3.0 Dicots AT1G77360