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  5. AT1G78540

AT1G78540


Description : SH2 domain protein B


Gene families : OG_01_0002373 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002373_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G78540
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Zci_12182.2 No alias no annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0000731 DNA synthesis involved in DNA repair IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008526 phosphatidylinositol transfer activity IEP HCCA
BP GO:0009292 genetic transfer IEP HCCA
BP GO:0009294 DNA mediated transformation IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0009662 etioplast organization IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019985 translesion synthesis IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
CC GO:0031350 intrinsic component of plastid membrane IEP HCCA
CC GO:0031351 integral component of plastid membrane IEP HCCA
CC GO:0031354 intrinsic component of plastid outer membrane IEP HCCA
CC GO:0031355 integral component of plastid outer membrane IEP HCCA
CC GO:0031358 intrinsic component of chloroplast outer membrane IEP HCCA
CC GO:0031359 integral component of chloroplast outer membrane IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042276 error-prone translesion synthesis IEP HCCA
BP GO:0042330 taxis IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0044764 multi-organism cellular process IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
BP GO:0048235 pollen sperm cell differentiation IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
MF GO:0120014 phospholipid transfer activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT1G78540