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  5. Pp3c13_6090V3.1

Pp3c13_6090V3.1


Description : vacuolar protein sorting-associated protein 2.3


Gene families : OG_01_0000836 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000836_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_6090V3.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
Cre04.g213450 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g735400 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_8060V3.1 No alias SNF7 family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0120009 intermembrane lipid transfer IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!