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  5. Pp3c13_8840V3.1

Pp3c13_8840V3.1


Description : structural maintenance of chromosomes 2


Gene families : OG_01_0002788 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002788_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_8840V3.1
Cluster HCCA: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
AT3G47460 No alias Structural maintenance of chromosomes (SMC) family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G62410 No alias structural maintenance of chromosomes 2 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g086650 No alias Cell cycle.mitosis and meiosis.chromatin... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g04330.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_06340.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016125 sterol metabolic process IEP HCCA
BP GO:0016126 sterol biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!