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AT1G79080


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0017094 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G79080
Cluster HCCA: Cluster_91


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000793 condensed chromosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005675 transcription factor TFIIH holo complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005971 ribonucleoside-diphosphate reductase complex IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
BP GO:0009186 deoxyribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
MF GO:0010488 UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity IEP HCCA
BP GO:0010493 Lewis a epitope biosynthetic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP HCCA
MF GO:0035250 UDP-galactosyltransferase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045739 positive regulation of DNA repair IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0047617 acyl-CoA hydrolase activity IEP HCCA
BP GO:0051054 positive regulation of DNA metabolic process IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
BP GO:2001022 positive regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 426 469
IPR002885 Pentatricopeptide_repeat 354 394
IPR002885 Pentatricopeptide_repeat 244 292
IPR002885 Pentatricopeptide_repeat 175 220
IPR002885 Pentatricopeptide_repeat 106 153
IPR002885 Pentatricopeptide_repeat 492 540
IPR002885 Pentatricopeptide_repeat 314 343
PLAZA 3.0 Dicots AT1G79080