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  5. Pp3c14_17310V3.1

Pp3c14_17310V3.1


Description : 40s ribosomal protein SA B


Gene families : OG_01_0001297 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c14_17310V3.1
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT1G72370 No alias 40s ribosomal protein SA 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre10.g432800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g26290.1 No alias component RPSa of SSU proteome 0.18 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_09507.2 No alias component uS2 of SSU proteome 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

  • Type GO Term Name Evidence Source
    MF GO:0003735 structural constituent of ribosome IEA Interproscan
    CC GO:0005840 ribosome IEA Interproscan
    BP GO:0006412 translation IEA Interproscan
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    Type GO Term Name Evidence Source
    MF GO:0003676 nucleic acid binding IEP HCCA
    MF GO:0003723 RNA binding IEP HCCA
    MF GO:0005488 binding IEP HCCA
    MF GO:0019843 rRNA binding IEP HCCA
    BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
    BP GO:0042254 ribosome biogenesis IEP HCCA
    BP GO:0044085 cellular component biogenesis IEP HCCA
    MF GO:0097159 organic cyclic compound binding IEP HCCA
    MF GO:1901363 heterocyclic compound binding IEP HCCA
    InterPro domains Description Start Stop
    IPR001865 Ribosomal_S2 106 173
    IPR001865 Ribosomal_S2 9 102
    No external refs found!