Pp3c14_23340V3.1

Description : RNA helicase, ATP-dependent, SK12/DOB1 protein

Gene families : OG_01_0001741 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001741_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c14_23340V3.1
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AT1G59760	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G06990	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.14	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g117900	No alias	RNA processing.RNA decay.exosome complex.associated...	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g05580.1	No alias	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.17	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	379	484
IPR025696	rRNA_proc-arch_dom	538	811
IPR012961	Ski2_C	840	1009
IPR011545	DEAD/DEAH_box_helicase_dom	91	238

External Links

No external refs found!