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  5. Pp3c14_3990V3.1

Pp3c14_3990V3.1


Description : uracil dna glycosylase


Gene families : OG_01_0000079 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c14_3990V3.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11550V3.1 No alias uracil dna glycosylase 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_15740V3.1 No alias nuclear RNA polymerase A1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_15750V3.1 No alias uracil dna glycosylase 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_231V3.1 No alias nuclear RNA polymerase D1A 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4000V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4010V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19420V3.1 No alias nuclear RNA polymerase A1 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12590V3.1 No alias uracil dna glycosylase 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_11510V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_15140V3.1 No alias RNA polymerase II large subunit 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_270V3.1 No alias RNA polymerase II large subunit 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_280V3.1 No alias uracil dna glycosylase 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_30040V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_9940V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_10300V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_1950V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24940V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1410V3.1 No alias RNA polymerase II large subunit 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15710V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4620V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s67_110V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006313 transposition, DNA-mediated IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032196 transposition IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005122 Uracil-DNA_glycosylase-like 39 175
No external refs found!