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  5. Pp3c14_8600V3.1

Pp3c14_8600V3.1


Description : Ribosomal protein L6 family


Gene families : OG_01_0001364 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001364_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c14_8600V3.1
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT1G33120 No alias Ribosomal protein L6 family 0.31 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G33140 No alias Ribosomal protein L6 family 0.33 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G10450 No alias Ribosomal protein L6 family 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g494050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.39 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.26 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13444.1 No alias component uL6 of LSU proteome component 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 99 177
IPR020040 Ribosomal_L6_a/b-dom 13 86
No external refs found!