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Description : Tudor/PWWP/MBT superfamily protein
Gene families : OG_01_0000804 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000804_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT1G80810 | |
| Cluster | HCCA: Cluster_258 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Mp3g13850.1 | No alias | cohesin cofactor (PDS5) | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c20_23000V3.1 | No alias | binding | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000785 | chromatin | IEP | HCCA |
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| CC | GO:0005652 | nuclear lamina | IEP | HCCA |
| CC | GO:0005819 | spindle | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006513 | protein monoubiquitination | IEP | HCCA |
| CC | GO:0008278 | cohesin complex | IEP | HCCA |
| BP | GO:0010390 | histone monoubiquitination | IEP | HCCA |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | HCCA |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | HCCA |
| CC | GO:0016363 | nuclear matrix | IEP | HCCA |
| BP | GO:0016574 | histone ubiquitination | IEP | HCCA |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0033523 | histone H2B ubiquitination | IEP | HCCA |
| CC | GO:0034399 | nuclear periphery | IEP | HCCA |
| BP | GO:0043687 | post-translational protein modification | IEP | HCCA |
| BP | GO:0045893 | positive regulation of transcription, DNA-templated | IEP | HCCA |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
| BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | HCCA |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | HCCA |
No InterPro domains available for this sequence
| PLAZA 3.0 Dicots | AT1G80810 |