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  5. Pp3c16_12590V3.1

Pp3c16_12590V3.1


Description : uracil dna glycosylase


Gene families : OG_01_0000079 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_12590V3.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11550V3.1 No alias uracil dna glycosylase 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_15750V3.1 No alias uracil dna glycosylase 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_231V3.1 No alias nuclear RNA polymerase D1A 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3990V3.1 No alias uracil dna glycosylase 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4000V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19420V3.1 No alias nuclear RNA polymerase A1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19430V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_10730V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_11510V3.1 No alias No annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_15140V3.1 No alias RNA polymerase II large subunit 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_270V3.1 No alias RNA polymerase II large subunit 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_280V3.1 No alias uracil dna glycosylase 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_30040V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_9940V3.1 No alias RNA polymerase II large subunit 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_10300V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_1950V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24940V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1410V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15700V3.1 No alias nuclear RNA polymerase C1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15710V3.1 No alias uracil dna glycosylase 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4620V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4630V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12680V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s67_110V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR005122 Uracil-DNA_glycosylase-like 39 190
No external refs found!