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  5. Pp3c16_6050V3.1

Pp3c16_6050V3.1


Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases


Gene families : OG_01_0000342 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c16_6050V3.1
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_25280V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_13900V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3970V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_13750V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12570V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_390V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_18830V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24900V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12701V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 370 777
IPR006133 DNA-dir_DNA_pol_B_exonuc 147 302
No external refs found!