AT1G08070

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0018116 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G08070
Cluster	HCCA: Cluster_79

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IMP	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	HCCA
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	HCCA
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
CC	GO:0000139	Golgi membrane	IEP	HCCA
CC	GO:0000164	protein phosphatase type 1 complex	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
MF	GO:0003991	acetylglutamate kinase activity	IEP	HCCA
MF	GO:0004124	cysteine synthase activity	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0004737	pyruvate decarboxylase activity	IEP	HCCA
MF	GO:0004845	uracil phosphoribosyltransferase activity	IEP	HCCA
MF	GO:0004849	uridine kinase activity	IEP	HCCA
BP	GO:0005987	sucrose catabolic process	IEP	HCCA
BP	GO:0006222	UMP biosynthetic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genetic imprinting	IEP	HCCA
BP	GO:0006520	cellular amino acid metabolic process	IEP	HCCA
BP	GO:0006525	arginine metabolic process	IEP	HCCA
BP	GO:0006526	arginine biosynthetic process	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006591	ornithine metabolic process	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006651	diacylglycerol biosynthetic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
MF	GO:0008195	phosphatidate phosphatase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	HCCA
BP	GO:0008655	pyrimidine-containing compound salvage	IEP	HCCA
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009129	pyrimidine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009130	pyrimidine nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009173	pyrimidine ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009174	pyrimidine ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009313	oligosaccharide catabolic process	IEP	HCCA
CC	GO:0009514	glyoxysome	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010138	pyrimidine ribonucleotide salvage	IEP	HCCA
MF	GO:0010283	pinoresinol reductase activity	IEP	HCCA
BP	GO:0010288	response to lead ion	IEP	HCCA
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	HCCA
BP	GO:0015675	nickel cation transport	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
MF	GO:0016597	amino acid binding	IEP	HCCA
MF	GO:0016657	oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016929	SUMO-specific protease activity	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
MF	GO:0019206	nucleoside kinase activity	IEP	HCCA
BP	GO:0022619	generative cell differentiation	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
CC	GO:0031306	intrinsic component of mitochondrial outer membrane	IEP	HCCA
CC	GO:0031307	integral component of mitochondrial outer membrane	IEP	HCCA
BP	GO:0032262	pyrimidine nucleotide salvage	IEP	HCCA
CC	GO:0032592	integral component of mitochondrial membrane	IEP	HCCA
MF	GO:0032791	lead ion binding	IEP	HCCA
BP	GO:0032881	regulation of polysaccharide metabolic process	IEP	HCCA
MF	GO:0034618	arginine binding	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0042450	arginine biosynthetic process via ornithine	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0043173	nucleotide salvage	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
BP	GO:0044206	UMP salvage	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0044770	cell cycle phase transition	IEP	HCCA
BP	GO:0044772	mitotic cell cycle phase transition	IEP	HCCA
BP	GO:0044843	cell cycle G1/S phase transition	IEP	HCCA
BP	GO:0045962	positive regulation of development, heterochronic	IEP	HCCA
BP	GO:0046049	UMP metabolic process	IEP	HCCA
BP	GO:0046339	diacylglycerol metabolic process	IEP	HCCA
BP	GO:0046352	disaccharide catabolic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046443	FAD metabolic process	IEP	HCCA
BP	GO:0046460	neutral lipid biosynthetic process	IEP	HCCA
BP	GO:0046463	acylglycerol biosynthetic process	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051783	regulation of nuclear division	IEP	HCCA
BP	GO:0071514	genetic imprinting	IEP	HCCA
BP	GO:0072387	flavin adenine dinucleotide metabolic process	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
BP	GO:0090435	protein localization to nuclear envelope	IEP	HCCA
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	HCCA
MF	GO:0120227	acyl-CoA binding	IEP	HCCA
MF	GO:1901567	fatty acid derivative binding	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
BP	GO:2000036	regulation of stem cell population maintenance	IEP	HCCA
BP	GO:2000904	regulation of starch metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	408	431
IPR002885	Pentatricopeptide_repeat	172	194
IPR002885	Pentatricopeptide_repeat	305	328
IPR002885	Pentatricopeptide_repeat	101	130
IPR002885	Pentatricopeptide_repeat	508	533
IPR002885	Pentatricopeptide_repeat	198	225
IPR032867	DYW_dom	607	731
IPR002885	Pentatricopeptide_repeat	436	481
IPR002885	Pentatricopeptide_repeat	229	277
IPR002885	Pentatricopeptide_repeat	330	378

External Links

PLAZA 3.0 Dicots	AT1G08070

AT1G08070

Expression Profile

Co-expression Networks

Functional Annotation