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  5. Pp3c19_23020V3.1

Pp3c19_23020V3.1


Description : No annotation


Gene families : OG_01_0000433 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000433_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c19_23020V3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Pp3c11_220V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_26910V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_27010V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_300V3.1 No alias CCCH-type zinc finger family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_40V3.1 No alias No annotation 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_20630V3.1 No alias CCCH-type zinc finger family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_220V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_29008V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s124_80V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA

No InterPro domains available for this sequence

No external refs found!