Pp3c1_26280V3.1


Description : breast basic conserved 1


Gene families : OG_01_0001081 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001081_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_26280V3.1
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AT3G49010 No alias breast basic conserved 1 0.53 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G23900 No alias Ribosomal protein L13e family protein 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre14.g630100 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g04920.1 No alias component RPL13 of LSU proteome component 0.43 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g19790.1 No alias component RPL13 of LSU proteome component 0.4 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3490V3.1 No alias breast basic conserved 1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_21130V3.1 No alias breast basic conserved 1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04606.1 No alias component eL13 of LSU proteome component 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 81 259
No external refs found!