Description : breast basic conserved 1
Gene families : OG_01_0001081 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001081_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Pp3c1_26280V3.1 | |
Cluster | HCCA: Cluster_202 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G49010 | No alias | breast basic conserved 1 | 0.53 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT5G23900 | No alias | Ribosomal protein L13e family protein | 0.2 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Cre14.g630100 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Mp1g04920.1 | No alias | component RPL13 of LSU proteome component | 0.43 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Mp2g19790.1 | No alias | component RPL13 of LSU proteome component | 0.4 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c14_3490V3.1 | No alias | breast basic conserved 1 | 0.07 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Pp3c3_21130V3.1 | No alias | breast basic conserved 1 | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
Zci_04606.1 | No alias | component eL13 of LSU proteome component | 0.2 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001380 | Ribosomal_L13e | 81 | 259 |
No external refs found! |