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  5. Pp3c1_300V3.1

Pp3c1_300V3.1


Description : 5\-3\ exonuclease family protein


Gene families : OG_01_0001017 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001017_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_300V3.1
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11580V3.1 No alias 5\-3\ exonuclease family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_14640V3.1 No alias 5\-3\ exonuclease family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_14688V3.1 No alias 5\-3\ exonuclease family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3960V3.1 No alias 5\-3\ exonuclease family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_13740V3.1 No alias No annotation 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19470V3.1 No alias 5\-3\ exonuclease family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_2390V3.1 No alias 5\-3\ exonuclease family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_10611V3.1 No alias 5\-3\ exonuclease family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006086 XPG-I_dom 85 160
No external refs found!