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  5. Pp3c1_3700V3.1

Pp3c1_3700V3.1


Description : LisH dimerisation motif;WD40/YVTN repeat-like-containing domain


Gene families : OG_01_0001507 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001507_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_3700V3.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Pp3c1_3770V3.1 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_31720V3.1 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR006594 LisH 10 36
IPR001680 WD40_repeat 657 693
IPR001680 WD40_repeat 737 773
IPR001680 WD40_repeat 573 607
IPR001680 WD40_repeat 825 860
IPR001680 WD40_repeat 615 649
No external refs found!