AT2G13560

Description : NAD-dependent malic enzyme 1

Gene families : OG_01_0003340 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003340_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G13560
Cluster	HCCA: Cluster_246

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004470	malic enzyme activity	ISS	Interproscan
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
MF	GO:0005524	ATP binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISS	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006096	glycolytic process	RCA	Interproscan
BP	GO:0006108	malate metabolic process	IDA	Interproscan
BP	GO:0006108	malate metabolic process	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006165	nucleoside diphosphate phosphorylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006757	ATP generation from ADP	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006833	water transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	RCA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IDA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009132	nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009135	purine nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009185	ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	RCA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016615	malate dehydrogenase activity	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	None	Extended
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	None	Extended
MF	GO:0016652	oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	ISS	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042044	fluid transport	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IDA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043648	dicarboxylic acid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046031	ADP metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0046939	nucleotide phosphorylation	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0050897	cobalt ion binding	IDA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	HCCA
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0000919	cell plate assembly	IEP	HCCA
MF	GO:0002020	protease binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0003872	6-phosphofructokinase activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004565	beta-galactosidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	HCCA
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005797	Golgi medial cisterna	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
CC	GO:0005884	actin filament	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
CC	GO:0005945	6-phosphofructokinase complex	IEP	HCCA
BP	GO:0006464	cellular protein modification process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006491	N-glycan processing	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006882	cellular zinc ion homeostasis	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006896	Golgi to vacuole transport	IEP	HCCA
BP	GO:0006897	endocytosis	IEP	HCCA
BP	GO:0006898	receptor-mediated endocytosis	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
MF	GO:0008443	phosphofructokinase activity	IEP	HCCA
BP	GO:0009100	glycoprotein metabolic process	IEP	HCCA
BP	GO:0009306	protein secretion	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009833	plant-type primary cell wall biogenesis	IEP	HCCA
BP	GO:0009920	cell plate formation involved in plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010215	cellulose microfibril organization	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	HCCA
BP	GO:0015802	basic amino acid transport	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
MF	GO:0015925	galactosidase activity	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016125	sterol metabolic process	IEP	HCCA
BP	GO:0016126	sterol biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016871	cycloartenol synthase activity	IEP	HCCA
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
MF	GO:0019902	phosphatase binding	IEP	HCCA
MF	GO:0019903	protein phosphatase binding	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030135	coated vesicle	IEP	HCCA
CC	GO:0030136	clathrin-coated vesicle	IEP	HCCA
CC	GO:0030139	endocytic vesicle	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
MF	GO:0030276	clathrin binding	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031204	posttranslational protein targeting to membrane, translocation	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
MF	GO:0031559	oxidosqualene cyclase activity	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
CC	GO:0031985	Golgi cisterna	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	HCCA
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
CC	GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	IEP	HCCA
MF	GO:0042285	xylosyltransferase activity	IEP	HCCA
BP	GO:0042732	D-xylose metabolic process	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043255	regulation of carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
MF	GO:0043424	protein histidine kinase binding	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044267	cellular protein metabolic process	IEP	HCCA
CC	GO:0045334	clathrin-coated endocytic vesicle	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
MF	GO:0050513	glycoprotein 2-beta-D-xylosyltransferase activity	IEP	HCCA
BP	GO:0051017	actin filament bundle assembly	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0055069	zinc ion homeostasis	IEP	HCCA
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	HCCA
BP	GO:0061572	actin filament bundle organization	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071692	protein localization to extracellular region	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072583	clathrin-dependent endocytosis	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012301	Malic_N_dom	120	300
IPR012302	Malic_NAD-bd	310	578

External Links

PLAZA 3.0 Dicots	AT2G13560

AT2G13560

Expression Profile

Co-expression Networks

Functional Annotation