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Description : F-box/RNI-like superfamily protein
Gene families : OG_01_0000213 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000213_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c20_20820V3.1 | |
| Cluster | HCCA: Cluster_42 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Pp3c18_4900V3.1 | No alias | F-box/RNI-like superfamily protein | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c20_15870V3.1 | No alias | F-box/RNI-like superfamily protein | 0.06 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c20_15890V3.1 | No alias | F-box/RNI-like superfamily protein | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c20_15990V3.1 | No alias | F-box/RNI-like superfamily protein | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c20_20750V3.1 | No alias | No annotation | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c3_35860V3.1 | No alias | F-box/RNI-like superfamily protein | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c3_35880V3.1 | No alias | No annotation | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_11940V3.1 | No alias | F-box/RNI-like superfamily protein | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_5549V3.1 | No alias | F-box/RNI-like superfamily protein | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_5570V3.1 | No alias | F-box/RNI-like superfamily protein | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_5640V3.1 | No alias | No annotation | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_5660V3.1 | No alias | F-box/RNI-like superfamily protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_5960V3.1 | No alias | F-box/RNI-like superfamily protein | 0.06 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_8180V3.1 | No alias | F-box/RNI-like superfamily protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c9_16320V3.1 | No alias | F-box/RNI-like superfamily protein | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000723 | telomere maintenance | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006351 | transcription, DNA-templated | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| BP | GO:0032200 | telomere organization | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0050896 | response to stimulus | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |