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  5. Pp3c20_23170V3.1

Pp3c20_23170V3.1


Description : ubiquitin extension protein 1


Gene families : OG_01_0001370 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c20_23170V3.1
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.41 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G52590 No alias ubiquitin extension protein 1 0.46 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.45 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 78 127
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!