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  5. AT2G15460

AT2G15460


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000396 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G15460
Cluster HCCA: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
AT2G26620 No alias Pectin lyase-like superfamily protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G40310 No alias Pectin lyase-like superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G07820 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0004338 glucan exo-1,3-beta-glucosidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005275 amine transmembrane transporter activity IEP HCCA
MF GO:0005345 purine nucleobase transmembrane transporter activity IEP HCCA
MF GO:0005451 monovalent cation:proton antiporter activity IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008324 cation transmembrane transporter activity IEP HCCA
MF GO:0008422 beta-glucosidase activity IEP HCCA
BP GO:0008643 carbohydrate transport IEP HCCA
MF GO:0009824 AMP dimethylallyltransferase activity IEP HCCA
CC GO:0012505 endomembrane system IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015205 nucleobase transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0015298 solute:cation antiporter activity IEP HCCA
MF GO:0015299 solute:proton antiporter activity IEP HCCA
MF GO:0015491 cation:cation antiporter activity IEP HCCA
BP GO:0015749 monosaccharide transmembrane transport IEP HCCA
MF GO:0015926 glucosidase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
CC GO:0042995 cell projection IEP HCCA
MF GO:0052622 ATP dimethylallyltransferase activity IEP HCCA
MF GO:0052623 ADP dimethylallyltransferase activity IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 64 390
PLAZA 3.0 Dicots AT2G15460