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  5. AT2G16520

AT2G16520


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 72 Blast hits to 69 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G16520
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT2G19610 No alias RING/U-box superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G21420 No alias IBR domain containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25360 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25370 No alias RING/U-box superfamily protein 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G43180 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45460 No alias IBR domain containing protein 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470 No alias IBR domain containing protein 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45510 No alias RING/U-box protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45580 No alias RING/U-box protein with C6HC-type zinc finger 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G07640 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 2 77
PLAZA 3.0 Dicots AT2G16520