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  5. Pp3c22_7700V3.1

Pp3c22_7700V3.1


Description : No annotation


Gene families : OG_01_0006914 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006914_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c22_7700V3.1
Cluster HCCA: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
AT2G40430 No alias CONTAINS InterPro DOMAIN/s: P60-like... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre07.g348250 No alias Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05713.1 No alias pre-60S ribosomal subunit assembly factor (SMO4) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011687 Nop53/GLTSCR2 10 356
No external refs found!