AT2G17310

Description : F-box and associated interaction domains-containing protein

Gene families : OG_01_0000237 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000237_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G17310
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
AT1G32430	No alias	F-box and associated interaction domains-containing protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G47390	No alias	F-box and associated interaction domains-containing protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G51290	No alias	F-box and associated interaction domains-containing protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G58090	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G59630	No alias	F-box associated ubiquitination effector family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G77650	No alias	F-box associated ubiquitination effector family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G14710	No alias	F-box family protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G16580	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G16590	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59590	No alias	jacalin lectin family protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59610	No alias	F-box family protein / jacalin lectin family protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G37040	No alias	F-box family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IMP	Interproscan
BP	GO:0009620	response to fungus	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	ISS	Interproscan
CC	GO:0019005	SCF ubiquitin ligase complex	ISS	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0003883	CTP synthase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0009299	mRNA transcription	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
CC	GO:0031350	intrinsic component of plastid membrane	IEP	HCCA
CC	GO:0031351	integral component of plastid membrane	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006527	F-box-assoc_dom_typ1	199	361
IPR001810	F-box_dom	3	37

External Links

PLAZA 3.0 Dicots	AT2G17310

AT2G17310

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation