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  5. Pp3c23_13240V3.1

Pp3c23_13240V3.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000360 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000360_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c23_13240V3.1
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AT4G23500 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41870 No alias Pectin lyase-like superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g13870.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_09024.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!