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AT2G18510


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0007119 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G18510
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cre06.g254800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
CC GO:0000932 P-body IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0004713 protein tyrosine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006611 protein export from nucleus IEP HCCA
BP GO:0006658 phosphatidylserine metabolic process IEP HCCA
BP GO:0006659 phosphatidylserine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0010603 regulation of cytoplasmic mRNA processing body assembly IEP HCCA
BP GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
MF GO:0017169 CDP-alcohol phosphatidyltransferase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
MF GO:0032266 phosphatidylinositol-3-phosphate binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033962 P-body assembly IEP HCCA
BP GO:0034249 negative regulation of cellular amide metabolic process IEP HCCA
BP GO:0034605 cellular response to heat IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0042938 dipeptide transport IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044089 positive regulation of cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0051879 Hsp90 protein binding IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070370 cellular heat acclimation IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0071944 cell periphery IEP HCCA
MF GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
BP GO:1902115 regulation of organelle assembly IEP HCCA
BP GO:1902117 positive regulation of organelle assembly IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 27 97
IPR000504 RRM_dom 114 184
PLAZA 3.0 Dicots AT2G18510