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  5. AT2G18780

AT2G18780


Description : F-box and associated interaction domains-containing protein


Gene families : OG_01_0000007 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G18780
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT1G25141 No alias F-box associated ubiquitination effector family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G04920 No alias F-box and associated interaction domains-containing protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP HCCA
BP GO:0000578 embryonic axis specification IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0002229 defense response to oomycetes IEP HCCA
BP GO:0002239 response to oomycetes IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP HCCA
MF GO:0005347 ATP transmembrane transporter activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005742 mitochondrial outer membrane translocase complex IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007029 endoplasmic reticulum organization IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015217 ADP transmembrane transporter activity IEP HCCA
BP GO:0015865 purine nucleotide transport IEP HCCA
BP GO:0015866 ADP transport IEP HCCA
BP GO:0015867 ATP transport IEP HCCA
BP GO:0015868 purine ribonucleotide transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP HCCA
MF GO:0030371 translation repressor activity IEP HCCA
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
BP GO:0034635 glutathione transport IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0042939 tripeptide transport IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051503 adenine nucleotide transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0070628 proteasome binding IEP HCCA
CC GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane IEP HCCA
CC GO:0071782 endoplasmic reticulum tubular network IEP HCCA
BP GO:0071786 endoplasmic reticulum tubular network organization IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
BP GO:0072337 modified amino acid transport IEP HCCA
BP GO:0080024 indolebutyric acid metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0098799 outer mitochondrial membrane protein complex IEP HCCA
CC GO:0098827 endoplasmic reticulum subcompartment IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006527 F-box-assoc_dom_typ1 208 367
IPR001810 F-box_dom 9 53
PLAZA 3.0 Dicots AT2G18780