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  5. Pp3c24_70V3.1

Pp3c24_70V3.1


Description : RNA helicase family protein


Gene families : OG_01_0000573 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000573_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_70V3.1
Cluster HCCA: Cluster_295

Target Alias Description ECC score Gene Family Method Actions
AT3G62310 No alias RNA helicase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G18465 No alias RNA helicase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13914.1 No alias no annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 58 206
IPR001650 Helicase_C 269 390
IPR007502 Helicase-assoc_dom 453 528
IPR011709 DUF1605 602 678
No external refs found!