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AT2G18940


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007949 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007949_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G18940
Cluster HCCA: Cluster_76


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004816 asparagine-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006421 asparaginyl-tRNA aminoacylation IEP HCCA
BP GO:0006949 syncytium formation IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0010020 chloroplast fission IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010118 stomatal movement IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
CC GO:0031350 intrinsic component of plastid membrane IEP HCCA
CC GO:0031351 integral component of plastid membrane IEP HCCA
CC GO:0031352 intrinsic component of plastid inner membrane IEP HCCA
CC GO:0031353 integral component of plastid inner membrane IEP HCCA
CC GO:0031356 intrinsic component of chloroplast inner membrane IEP HCCA
CC GO:0031357 integral component of chloroplast inner membrane IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0034248 regulation of cellular amide metabolic process IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043572 plastid fission IEP HCCA
MF GO:0043621 protein self-association IEP HCCA
BP GO:0045292 mRNA cis splicing, via spliceosome IEP HCCA
BP GO:0048316 seed development IEP HCCA
BP GO:0048564 photosystem I assembly IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 734 783
IPR002885 Pentatricopeptide_repeat 525 573
IPR002885 Pentatricopeptide_repeat 419 466
IPR002885 Pentatricopeptide_repeat 350 397
IPR002885 Pentatricopeptide_repeat 197 258
IPR002885 Pentatricopeptide_repeat 268 328
IPR002885 Pentatricopeptide_repeat 623 678
IPR002885 Pentatricopeptide_repeat 697 728
IPR002885 Pentatricopeptide_repeat 486 518
PLAZA 3.0 Dicots AT2G18940