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AT2G19610


Description : RING/U-box superfamily protein


Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G19610
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G21420 No alias IBR domain containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25370 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45460 No alias IBR domain containing protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470 No alias IBR domain containing protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45480 No alias RING/U-box protein with C6HC-type zinc finger 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45560 No alias zinc finger (C3HC4-type RING finger) family protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45570 No alias RING/U-box protein with C6HC-type zinc finger domain 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004448 isocitrate dehydrogenase activity IEP HCCA
MF GO:0004449 isocitrate dehydrogenase (NAD+) activity IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006102 isocitrate metabolic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009786 regulation of asymmetric cell division IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:1902652 secondary alcohol metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 274 342
IPR002156 RNaseH_domain 98 186
PLAZA 3.0 Dicots AT2G19610