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  5. Pp3c2_18826V3.1

Pp3c2_18826V3.1


Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases


Gene families : OG_01_0000342 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_18826V3.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11570V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_25280V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_13900V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_14630V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3970V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_13750V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12570V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_2990V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_18830V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24900V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15720V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 1 135
No external refs found!