1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c2_23477V3.1

Pp3c2_23477V3.1


Description : ribosomal protein L16


Gene families : OG_01_0001605 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001605_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_23477V3.1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
ATCG00790 No alias ribosomal protein L16 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
ATMG00080 No alias ribosomal protein L16 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g278224 No alias 60S ribosomal protein L16, mitochondrial OS=Prototheca... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g22400.1 No alias 60S ribosomal protein L16, mitochondrial OS=Marchantia... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g01250.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_10761.1 No alias component uL14c of large ribosomal subunit proteome 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!