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  5. AT2G21440

AT2G21440


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0008536 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G21440
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
Cre02.g104650 No alias No description available 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_7560V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000712 resolution of meiotic recombination intermediates IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
CC GO:0000932 P-body IEP HCCA
BP GO:0000957 mitochondrial RNA catabolic process IEP HCCA
BP GO:0000963 mitochondrial RNA processing IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004534 5'-3' exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004654 polyribonucleotide nucleotidyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004821 histidine-tRNA ligase activity IEP HCCA
MF GO:0004824 lysine-tRNA ligase activity IEP HCCA
MF GO:0004825 methionine-tRNA ligase activity IEP HCCA
MF GO:0004839 ubiquitin activating enzyme activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006427 histidyl-tRNA aminoacylation IEP HCCA
BP GO:0006430 lysyl-tRNA aminoacylation IEP HCCA
BP GO:0006431 methionyl-tRNA aminoacylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 cellular amino acid metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008409 5'-3' exonuclease activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009303 rRNA transcription IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010467 gene expression IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016233 telomere capping IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030619 U1 snRNA binding IEP HCCA
MF GO:0030620 U2 snRNA binding IEP HCCA
CC GO:0030870 Mre11 complex IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
BP GO:0031538 negative regulation of anthocyanin metabolic process IEP HCCA
BP GO:0031935 obsolete regulation of chromatin silencing IEP HCCA
CC GO:0031965 nuclear membrane IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033233 regulation of protein sumoylation IEP HCCA
BP GO:0033234 negative regulation of protein sumoylation IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0035265 organ growth IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045694 regulation of embryo sac egg cell differentiation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048530 fruit morphogenesis IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048645 animal organ formation IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:0098781 ncRNA transcription IEP HCCA
BP GO:0140053 mitochondrial gene expression IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000024 regulation of leaf development IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 23 91
IPR000504 RRM_dom 333 402
IPR000504 RRM_dom 563 623
PLAZA 3.0 Dicots AT2G21440