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  5. Pp3c2_28380V3.1

Pp3c2_28380V3.1


Description : NOP56-like pre RNA processing ribonucleoprotein


Gene families : OG_01_0006075 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_28380V3.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AT3G05060 No alias NOP56-like pre RNA processing ribonucleoprotein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G27120 No alias NOP56-like pre RNA processing ribonucleoprotein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre10.g441400 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!