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  5. Pp3c2_36190V3.1

Pp3c2_36190V3.1


Description : photosystem II light harvesting complex gene 2.1


Gene families : OG_01_0000051 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_36190V3.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT1G29910 No alias chlorophyll A/B binding protein 3 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29920 No alias chlorophyll A/B-binding protein 2 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29930 No alias chlorophyll A/B binding protein 1 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05070 No alias photosystem II light harvesting complex gene 2.2 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34420 No alias photosystem II light harvesting complex gene B1B2 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G27690 No alias photosystem II light harvesting complex gene 2.3 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G54270 No alias light-harvesting chlorophyll B-binding protein 3 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05530.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05980.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06710.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06720.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36220V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04788.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05966.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05967.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05968.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12461.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 68 233
No external refs found!