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  5. Pp3c2_4100V3.1

Pp3c2_4100V3.1


Description : ribulose bisphosphate carboxylase small chain 1A


Gene families : OG_01_0000042 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_4100V3.1
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
AT1G67090 No alias ribulose bisphosphate carboxylase small chain 1A 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g05990.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06040.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06050.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g09890.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_16000V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_20140V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15633.1 No alias "small subunit of ribulose-1,5-bisphosphat... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 75 183
No external refs found!