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Description : BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT2G22940 | |
| Cluster | HCCA: Cluster_97 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G16520 | No alias | FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... | 0.07 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT2G21420 | No alias | IBR domain containing protein | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT2G25370 | No alias | RING/U-box superfamily protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT2G26135 | No alias | RING/U-box protein with C6HC-type zinc finger | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G43180 | No alias | RING/U-box superfamily protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G45460 | No alias | IBR domain containing protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G45470 | No alias | IBR domain containing protein | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G45480 | No alias | RING/U-box protein with C6HC-type zinc finger | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G45510 | No alias | RING/U-box protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G45540 | No alias | RING/U-box protein with C6HC-type zinc finger | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G45560 | No alias | zinc finger (C3HC4-type RING finger) family protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G45570 | No alias | RING/U-box protein with C6HC-type zinc finger domain | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G45580 | No alias | RING/U-box protein with C6HC-type zinc finger | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005739 | mitochondrion | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005372 | water transmembrane transporter activity | IEP | HCCA |
| CC | GO:0005788 | endoplasmic reticulum lumen | IEP | HCCA |
| MF | GO:0015250 | water channel activity | IEP | HCCA |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | HCCA |
| CC | GO:0043233 | organelle lumen | IEP | HCCA |
| BP | GO:0046685 | response to arsenic-containing substance | IEP | HCCA |
| CC | GO:0070013 | intracellular organelle lumen | IEP | HCCA |
No InterPro domains available for this sequence
| PLAZA 3.0 Dicots | AT2G22940 |