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  5. Pp3c3_20140V3.1

Pp3c3_20140V3.1


Description : ribulose bisphosphate carboxylase small chain 1A


Gene families : OG_01_0000042 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_20140V3.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT1G67090 No alias ribulose bisphosphate carboxylase small chain 1A 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38410 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38420 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38430 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g120100 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g05990.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06010.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06020.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06030.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06050.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g10850.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g15070.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_1840V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_4100V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15633.1 No alias "small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 73 183
No external refs found!