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AT2G24590


Description : RNA recognition motif and CCHC-type zinc finger domains containing protein


Gene families : OG_01_0001371 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G24590
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cre09.g408200 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_5100V3.1 No alias serine/arginine-rich 22 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15987.1 No alias RNA splicing factor (RSZ21/22) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0008380 RNA splicing NAS Interproscan
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005675 transcription factor TFIIH holo complex IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006950 response to stress IEP HCCA
MF GO:0008143 poly(A) binding IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009631 cold acclimation IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP HCCA
BP GO:0043457 regulation of cellular respiration IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0048316 seed development IEP HCCA
BP GO:0048443 stamen development IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 97 112
IPR000504 RRM_dom 4 61
PLAZA 3.0 Dicots AT2G24590