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  5. Pp3c4_2000V3.1

Pp3c4_2000V3.1


Description : tubulin alpha-2 chain


Gene families : OG_01_0000395 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_2000V3.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
AT1G04820 No alias tubulin alpha-4 chain 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G50010 No alias tubulin alpha-2 chain 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G14960 No alias Tubulin/FtsZ family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G19780 No alias tubulin alpha-5 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_08159.1 No alias component alpha-Tubulin of alpha-beta-Tubulin heterodimer 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 213
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 263 392
No external refs found!