Pp3c4_20390V3.1


Description : DEAD/DEAH box helicase, putative


Gene families : OG_01_0004723 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004723_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_20390V3.1
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
AT1G70070 No alias DEAD/DEAH box helicase, putative 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g01470.1 No alias RNA helicase (ISE2) 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005887 integral component of plasma membrane IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
CC GO:0031226 intrinsic component of plasma membrane IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR012961 Ski2_C 1251 1419
IPR011545 DEAD/DEAH_box_helicase_dom 397 550
No external refs found!