Pp3c4_24940V3.1

Description : RNA polymerase II large subunit

Gene families : OG_01_0000079 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c4_24940V3.1
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
Pp3c10_11550V3.1	No alias	uracil dna glycosylase	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_15750V3.1	No alias	uracil dna glycosylase	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_231V3.1	No alias	nuclear RNA polymerase D1A	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3990V3.1	No alias	uracil dna glycosylase	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4000V3.1	No alias	RNA polymerase II large subunit	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4010V3.1	No alias	RNA polymerase II large subunit	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19420V3.1	No alias	nuclear RNA polymerase A1	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_10730V3.1	No alias	uracil dna glycosylase	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12590V3.1	No alias	uracil dna glycosylase	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_11510V3.1	No alias	No annotation	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_15140V3.1	No alias	RNA polymerase II large subunit	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_270V3.1	No alias	RNA polymerase II large subunit	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_280V3.1	No alias	uracil dna glycosylase	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_30040V3.1	No alias	RNA polymerase II large subunit	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_9940V3.1	No alias	RNA polymerase II large subunit	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_10300V3.1	No alias	RNA polymerase II large subunit	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24930V3.1	No alias	uracil dna glycosylase	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1410V3.1	No alias	RNA polymerase II large subunit	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15700V3.1	No alias	nuclear RNA polymerase C1	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4620V3.1	No alias	RNA polymerase II large subunit	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12680V3.1	No alias	RNA polymerase II large subunit	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_17820V3.1	No alias	uracil dna glycosylase	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s67_100V3.1	No alias	uracil dna glycosylase	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s67_110V3.1	No alias	RNA polymerase II large subunit	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004427	inorganic diphosphatase activity	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000722	RNA_pol_asu	2	46

External Links

No external refs found!

Pp3c4_24940V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation