Pp3c4_24950V3.1

Description : nuclear RNA polymerase C2

Gene families : OG_01_0000388 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000388_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c4_24950V3.1
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
Pp3c15_19410V3.1	No alias	DNA-directed RNA polymerase family protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_10710V3.1	No alias	DNA-directed RNA polymerase family protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_12270V3.1	No alias	DNA-directed RNA polymerase family protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_3310V3.1	No alias	No annotation	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_8540V3.1	No alias	nuclear RNA polymerase C2	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_8970V3.1	No alias	DNA-directed RNA polymerase family protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_15140V3.1	No alias	DNA-directed RNA polymerase family protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_35890V3.1	No alias	DNA-directed RNA polymerase family protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_37780V3.1	No alias	DNA-directed RNA polymerase family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_14800V3.1	No alias	DNA-directed RNA polymerase family protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1420V3.1	No alias	nuclear RNA polymerase C2	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12710V3.1	No alias	DNA-directed RNA polymerase family protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_17790V3.1	No alias	DNA-directed RNA polymerase family protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s67_170V3.1	No alias	DNA-directed RNA polymerase family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007120	DNA-dir_RNAP_su2_dom	1	53
IPR007641	RNA_pol_Rpb2_7	57	136

External Links

No external refs found!

Pp3c4_24950V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation