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  5. Pp3c4_6610V3.1

Pp3c4_6610V3.1


Description : glycine-rich RNA-binding protein 3


Gene families : OG_01_0000078 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_6610V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G18630 No alias glycine-rich RNA-binding protein 6 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G21660 No alias cold, circadian rhythm, and rna binding 2 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G37510 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G23830 No alias glycine-rich RNA-binding protein 4 0.31 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G26420 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G46020 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G13850 No alias glycine-rich RNA-binding protein 2 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G61030 No alias glycine-rich RNA-binding protein 3 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g21200.1 No alias RNA editing factor (ORRM) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g24130.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_23410V3.1 No alias glycine-rich RNA-binding protein 3 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 47 117
No external refs found!