AT2G26135

Description : RING/U-box protein with C6HC-type zinc finger

Gene families : OG_01_0000252 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G26135
Cluster	HCCA: Cluster_72

Target	Alias	Description	ECC score	Gene Family Method
AT2G16520	No alias	FUNCTIONS IN: molecular_function unknown; INVOLVED IN:...	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G22940	No alias	BEST Arabidopsis thaliana protein match is: zinc finger...	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G25370	No alias	RING/U-box superfamily protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45460	No alias	IBR domain containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45470	No alias	IBR domain containing protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45480	No alias	RING/U-box protein with C6HC-type zinc finger	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45500	No alias	BEST Arabidopsis thaliana protein match is: RING/U-box...	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45540	No alias	RING/U-box protein with C6HC-type zinc finger	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45555	No alias	RING/U-box protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45560	No alias	zinc finger (C3HC4-type RING finger) family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45570	No alias	RING/U-box protein with C6HC-type zinc finger domain	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45580	No alias	RING/U-box protein with C6HC-type zinc finger	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0016020	membrane	ISS	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018957	Znf_C3HC4_RING-type	153	198
IPR002867	IBR_dom	301	346
IPR002867	IBR_dom	224	285
IPR002156	RNaseH_domain	42	136

External Links

PLAZA 3.0 Dicots	AT2G26135