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  5. Pp3c5_20340V3.1

Pp3c5_20340V3.1


Description : tubulin beta chain 2


Gene families : OG_01_0000197 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_20340V3.1
Cluster HCCA: Cluster_305

Target Alias Description ECC score Gene Family Method Actions
AT1G20010 No alias tubulin beta-5 chain 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G29550 No alias tubulin beta-7 chain 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44340 No alias tubulin beta chain 4 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G62690 No alias tubulin beta chain 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G62700 No alias tubulin beta chain 3 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g542250 No alias Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g549550 No alias Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g20730.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g16780.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_14439.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 211
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 382
No external refs found!