Pp3c5_21100V3.1

Description : splicing factor-related

Gene families : OG_01_0004716 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004716_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c5_21100V3.1
Cluster	HCCA: Cluster_265

Target	Alias	Description	ECC score	Gene Family Method
Cre06.g297750	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g20400.1	No alias	component SF3A3 of splicing factor 3A complex	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05053.1	No alias	component SF3A3 of splicing factor 3A complex	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031774	SF3A3_dom	127	205
IPR021966	SF3a60_bindingd	82	105
IPR024598	SF3a60_C	332	509

External Links

No external refs found!