Pp3c5_3950V3.1

Description : No annotation

Gene families : OG_01_0000225 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000225_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c5_3950V3.1
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
Pp3c12_8610V3.1	No alias	No annotation	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_12720V3.1	No alias	No annotation	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_28150V3.1	No alias	No annotation	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_17170V3.1	No alias	No annotation	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_7790V3.1	No alias	No annotation	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_17790V3.1	No alias	No annotation	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15820V3.1	No alias	No annotation	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_22780V3.1	No alias	No annotation	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_2630V3.1	No alias	No annotation	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_4550V3.1	No alias	No annotation	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_1100V3.1	No alias	No annotation	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006313	transposition, DNA-mediated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0032196	transposition	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	transcription, DNA-templated	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002492	Transposase_Tc1-like	34	83
IPR038717	Tc1-like_DDE_dom	81	146

External Links

No external refs found!