Pp3c6_15720V3.1

Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases

Gene families : OG_01_0000342 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c6_15720V3.1
Cluster	HCCA: Cluster_91

Target	Alias	Description	ECC score	Gene Family Method
Pp3c10_25280V3.1	No alias	DNA binding;nucleotide binding;nucleic acid...	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_14630V3.1	No alias	DNA binding;nucleotide binding;nucleic acid...	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_13750V3.1	No alias	DNA binding;nucleotide binding;nucleic acid...	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12570V3.1	No alias	DNA binding;nucleotide binding;nucleic acid...	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_18826V3.1	No alias	DNA binding;nucleotide binding;nucleic acid...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_390V3.1	No alias	DNA binding;nucleotide binding;nucleic acid...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24900V3.1	No alias	No annotation	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12701V3.1	No alias	DNA binding;nucleotide binding;nucleic acid...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006133	DNA-dir_DNA_pol_B_exonuc	1	90
IPR006134	DNA-dir_DNA_pol_B_multi_dom	199	594

External Links

No external refs found!