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  5. AT2G27630

AT2G27630


Description : Ubiquitin carboxyl-terminal hydrolase-related protein


Gene families : OG_01_0000436 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000436_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G27630
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G52450 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65110 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65160 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65165 No alias No description available 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34230 No alias Protein with domains of unknown function (DUF627 and DUF629) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G61940 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G61950 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0003720 telomerase activity IEP HCCA
MF GO:0003721 telomerase RNA reverse transcriptase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0007004 telomere maintenance via telomerase IEP HCCA
MF GO:0008187 poly-pyrimidine tract binding IEP HCCA
MF GO:0008266 poly(U) RNA binding IEP HCCA
BP GO:0009662 etioplast organization IEP HCCA
BP GO:0010495 long-distance posttranscriptional gene silencing IEP HCCA
BP GO:0010833 telomere maintenance via telomere lengthening IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
CC GO:0031350 intrinsic component of plastid membrane IEP HCCA
CC GO:0031351 integral component of plastid membrane IEP HCCA
CC GO:0031354 intrinsic component of plastid outer membrane IEP HCCA
CC GO:0031355 integral component of plastid outer membrane IEP HCCA
CC GO:0031358 intrinsic component of chloroplast outer membrane IEP HCCA
CC GO:0031359 integral component of chloroplast outer membrane IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0050000 chromosome localization IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006865 DUF629 196 644
IPR006866 DUF627_N 18 125
PLAZA 3.0 Dicots AT2G27630